EcoToxXplorer

EcoToxXplorer Resources

Below are the actual files that are currently used for EcoToxChip ID annotations and EcoToxModule gene set analysis. All data are in .rds format, which is an object that can be read into R using the "readRDS()" function.

EcoToxChip annotation files

Japanese quail (Coturnix japonica)

  • Version 0.1 (384 genes) rds, csv
  • Version 0.1 (96 genes) rds, csv
  • Version 1.0 (384 genes) rds, csv

Double-crested cormorant (Phalacrocorax auritus)

  • Version 0.1 (384 genes) rds, csv

Fathead minnow (Pimephales promelas)

  • Version 0.1 (384 genes) rds, csv
  • Version 1.0 (384 genes) rds, csv

Rainbow trout (Oncorhynchus mykiss)

  • Version 0.1 (384 genes) rds, csv

African clawed frog (Xenopus laevis)

  • Version 0.1 (384 genes) rds, csv
  • Version 1.0 (384 genes) rds, csv

Northern leopard frog (Lithobates pipiens)

  • Version 0.1 (384 genes) rds, csv

EcoToxModule annotation files

Japanese quail (Coturnix japonica)

  • EcoToxModule (table format: rds, csv; list format: rds)
  • EcoToxProcess (list format: rds)

Fathead minnow (Pimephales promelas)

  • EcoToxModule (table format: rds, csv; list format: rds)
  • EcoToxProcess (list format: rds)

African clawed frog (Xenopus laevis)

  • EcoToxModule (table format: rds, csv; list format: rds)
  • EcoToxProcess (list format: rds)