FEATURES

ECOTOXCHIP ANALYSIS

Directly analyze EcoToxChip results here to guide decision-making for several ecological species and use cases.

INTERACTIVE EXPLORATION

Generate well-known statistical plots (e.g., volcano plots or heatmaps) or use novel tools (e.g., EcoToxBMD, EcoToxMods) to analyze toxicogenomics data.

SEVERAL DATA INPUTS

Start analysis using many types of inputs including RNAseq, microarray, or qPCR.

RAW RNA-seq DATA

Process raw RNA-seq files using our customized Galaxy server.

REPORT GENERATION

Summarize all executed analysis steps into a comprehensive report for proper documentation.

PROJECT MANAGEMENT

Create a user account to store your data and results, as well as resume your analysis.


News & Updates
  • Updated web framework to PrimeFaces 11 (01/07/2022);
  • Fixed bug in GDC QA/QC plot (11/29/2021);
  • Check out our EcoToxXplorer paper just released on Environ Toxicol Chem (11/12/2021);
  • Added a Resources page with links to annotation files for EcoToxChips and EcoToxModules (11/05/2021);
  • Enhanced exception handling for dose response curve analysis (11/02/2021);
  • Added support for XLA v1 chip (10/12/2021);
  • Enhanced dose response normalization and curve fitting based on user feedback (10/04/2021);
  • Fixed bug with differential expression for quantile normalized chip data (09/23/2021);
  • Added exception handling for dealing with unexpected values chip data (08/26/2021);
  • Fixed issue for table sorting and better support for advanced comparisons in differential analysis (06/11/2021);
Read more ......

ACKNOWLEDGEMENTS