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Data Upload and Annotation

EcoToxXplorer accepts processed Microarray expression matrix data matrix as input. There is a standard format which needs to be followed - hover your mouse to the question mark next to Data File for more details.

WWTP field study
Dataset Card
18 Agilent-019597 FHM_Denslow_8x15K data, normalized, log 2 scale (NCBI accession: GSE96678).
Gene expression of fathead minnow liver exposed to Ely WWTP effluent. Treatment = upstream of WWTP, WWTP effluent point source, downstream of WWTP.
BPA risk assessment
Dataset Card
32 Agilent-019597 FHM_Denslow_8x15K data, normalized, log 2 scale (NCBI accession: GSE28353).
Gene expression of fathead minnow ovary exposed to different doses of bisphenol A. Treatment = dose (control, 0.01, 0.1, 1, 10, 100 ug/L).
RDX risk assessment
Dataset Card
22 Agilent-019597 FHM_Denslow_8x15K data, normalized, log 2 scale (NCBI accession: GSE70936).
Gene expression of fathead minnow ovary exposed to different doses of cyclotrimethylenetrinitramine (RDX). Treatment = dose (control, 0.01, 0.1, 0.7, 3, 5 ug/L)
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